Summarize clonotype changes across stringency levels

Tracks how clonotype assignments change as the stringency level is relaxed, identifying which clonotypes are merged at each successive level.

Usage

clonotype_summary(TCR_data, mapping_levels = .mapping.levels)

Arguments

TCR_data

A data frame with clone ID columns for each stringency level (as output by assign_clonotype).

mapping_levels

Character vector of stringency level names in order from most to least strict.

Value

A data frame summarizing the number of clonotypes and whether merging occurred at each stringency level transition.