Map clone IDs from VDJigsaw results to wide-format data — map_clone_id • VDJigsaw

Extracts the clone ID columns from VDJigsaw results and aligns them to the rows of the wide-format VDJ data frame.

Usage

map_clone_id(
  VDJigsaw_res,
  VDJ_contigs_wide,
  cols_to_map = c("CloneID.dual_chain_dual_allele", "CloneID.loose",
    "CloneID.dual_chain_one_partial", "CloneID.dual_chain_both_partial",
    "CloneID.single_chain_dual_allele", "CloneID.single_chain_single_allele")
)

Arguments

VDJigsaw_res: Output from identify_clonotypes.
VDJ_contigs_wide: Wide-format data frame (output of pivot_VDJ).
cols_to_map: Character vector of clone ID column names to extract.

Value

A data frame with the requested clone ID columns, aligned to the rows of VDJ_contigs_wide.